1. Home
  2. Species
  3. Chlorella sorokiniana
  4. Sequence
  5. lcl|LHPG02000006.1_cds_PRW57711.1_8458

lcl|LHPG02000006.1_cds_PRW57711.1_8458 (PRW57711)


Aliases : PRW57711

Description : CHROMATIN REMODELING 5 isoform A


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000006.1_cds_PRW57711.1_8458
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000802.67 tig00000802_g4315.t2 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.05 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
Dusal.0035s00025.1 33196663 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
EOD36557 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
OT_05G01620.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
OT_07G04020.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
PTI_10G02350.1 No alias Chromo domain; SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
PTI_12G00850.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.02 OrthoFinder
PTI_24G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.05 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.02 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.01 OrthoFinder
TP11G02170.1 No alias SNF2-related, N-terminal domain; Chromo domain;... 0.02 OrthoFinder
XM_002503134.1 MICPUN_59225, 59225 SNF2 super family 0.02 OrthoFinder
XM_003055229.1 MicpuC2_12258, 12258 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
XM_003061952.1 MicpuC2_51787, 51787 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01003629.1_cds_GFH27811.1_22288 HaLaN_26193, GFH27811 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494382.1_2912 KAA8494382 ISWI chromatin-remodeling complex ATPase CHR17 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492942.1_2678 KAA8492942 TATA-binding protein-associated factor 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR023780 Chromo_domain 358 408
IPR023780 Chromo_domain 455 507
IPR000330 SNF2_N 561 829
IPR001650 Helicase_C 860 970
No external refs found!