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  5. lcl|LHPG02000005.1_cds_PRW58335.1_7856

lcl|LHPG02000005.1_cds_PRW58335.1_7856 (PRW58335)


Aliases : PRW58335

Description : DNA mismatch repair MSH4


Gene families : OG_01_0000718 (OrthoFinder) Phylogenetic Tree(s): OG0000718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000005.1_cds_PRW58335.1_7856
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cre16.g692550 30777154, MSH4 DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0005044 scavenger receptor activity IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 638 823
IPR007696 DNA_mismatch_repair_MutS_core 226 579
No external refs found!