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  5. lcl|LHPG02000005.1_cds_PRW58313.1_8175

lcl|LHPG02000005.1_cds_PRW58313.1_8175 (PRW58313)


Aliases : PRW58313

Description : High mobility group


Gene families : OG_01_0000533 (OrthoFinder) Phylogenetic Tree(s): OG0000533_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000005.1_cds_PRW58313.1_8175
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000691.32 tig00000691_g3184.t1 No description available 0.04 OrthoFinder
Cre03.g193900 30787431 No description available 0.03 OrthoFinder
Cz01g10020.t1 No alias Transcription factor CBF/NF-Y/archaeal histone domain;... 0.02 OrthoFinder
PTI_28G00620.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54854 54854 High mobility group box domain; Transcription factor... 0.03 OrthoFinder
XM_002505608.1 MICPUN_63410, 63410 Transcription factor CBF/NF-Y/archaeal histone domain;... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007051 spindle organization IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0051225 spindle assembly IEP Enrichment
CC GO:0070652 HAUS complex IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 101 160
IPR009071 HMG_box_dom 4 69
No external refs found!