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  5. lcl|LHPG02000005.1_cds_PRW58178.1_8002

lcl|LHPG02000005.1_cds_PRW58178.1_8002 (PRW58178)


Aliases : PRW58178

Description : RNA-binding domain-containing


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000005.1_cds_PRW58178.1_8002
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cre06.g275100 30778429 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.03 OrthoFinder
Cre10.g466450 30789814 No description available 0.13 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Cz08g29220.t1 No alias RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
Dusal.0556s00003.1 33195343 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
EOD18277 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
EOD39665 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_04G04950.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
OT_05G05100.1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
PTI_22G00530.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Sro402_g135470.1 Contig305.g4008 Stimulation factor subunit 2 tau variant 0.03 OrthoFinder
Sro656_g182510.1 Contig256.g3162 Splicing factor 3B subunit 4 0.06 OrthoFinder
SymbC1.scaffold3432.4 3432.4 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_57231 57231 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0029s0122.1 32887292 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_002505110.1 MICPUN_102989, 102989 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003059463.1 MicpuC2_40226, 40226 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003060411.1 MicpuC2_60299, 60299 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01003640.1_cds_GFH27838.1_22315 HaLaN_26222, GFH27838 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01004145.1_cds_GFH29022.1_23499 HaLaN_27610, GFH29022 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 369 438
IPR000504 RRM_dom 542 609
No external refs found!