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  5. lcl|LHPG02000005.1_cds_PRW58155.1_7682

lcl|LHPG02000005.1_cds_PRW58155.1_7682 (PRW58155)


Aliases : PRW58155

Description : Small nuclear ribonucleo Sm D1


Gene families : OG_01_0003870 (OrthoFinder) Phylogenetic Tree(s): OG0003870_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000005.1_cds_PRW58155.1_7682
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000754.23 tig00000754_g3906.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder
XM_002501419.1 MICPUN_58041, 58041 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
MF GO:0047750 cholestenol delta-isomerase activity IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
MF GO:0097020 COPII receptor activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 70
No external refs found!