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Aliases : PRW58082
Description : Strawberry notch-like protein 1-like
Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|LHPG02000005.1_cds_PRW58082.1_8009 | |
| Cluster | HCCA: Cluster_54 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre01.g053250 | 30789240 | Protein FORGETTER 1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder | |
| Cre02.g095045 | 30785065 | Protein FORGETTER 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| Cz08g14040.t1 | No alias | Strawberry notch, helicase C domain;... | 0.03 | OrthoFinder | |
| Cz08g29240.t1 | No alias | Strawberry notch, AAA domain [Interproscan]. | 0.02 | OrthoFinder | |
| Cz08g29260.t1 | No alias | Strawberry notch, helicase C domain; Zinc finger,... | 0.02 | OrthoFinder | |
| Dusal.0166s00008.1 | 33188726 | Strawberry notch, helicase C domain [Interproscan]. | 0.03 | OrthoFinder | |
| Dusal.0695s00005.1 | 33201554 | Strawberry notch, helicase C domain; Strawberry notch,... | 0.02 | OrthoFinder | |
| EOD16011 | No alias | Strawberry notch, helicase C domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD41135 | No alias | Strawberry notch, AAA domain; Strawberry notch, helicase... | 0.02 | OrthoFinder | |
| Sro106_g053630.1 | Contig1122.g10760 | Strawberry notch homolog 2 | 0.02 | OrthoFinder | |
| Transcript_contig_55863 | 55863 | Strawberry notch, helicase C domain; Strawberry notch,... | 0.01 | OrthoFinder | |
| Transcript_contig_78647 | 78647 | Strawberry notch, AAA domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01001655.1_cds_GFH20545.1_15022 | HaLaN_17686, GFH20545 | PHD-type domain-containing protein | 0.02 | OrthoFinder | |
| lcl|BLLF01001655.1_cds_GFH20547.1_15024 | HaLaN_17688, GFH20547 | Strawberry notch, AAA domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01002831.1_cds_GFH25494.1_19971 | HaLaN_23470, GFH25494 | Strawberry notch, AAA domain [Interproscan]. | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Enrichment |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003684 | damaged DNA binding | IEP | Enrichment |
| MF | GO:0004843 | thiol-dependent deubiquitinase | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006281 | DNA repair | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006950 | response to stress | IEP | Enrichment |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
| MF | GO:0008242 | omega peptidase activity | IEP | Enrichment |
| MF | GO:0016851 | magnesium chelatase activity | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| MF | GO:0051002 | ligase activity, forming nitrogen-metal bonds | IEP | Enrichment |
| MF | GO:0051003 | ligase activity, forming nitrogen-metal bonds, forming coordination complexes | IEP | Enrichment |
| BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0101005 | deubiquitinase activity | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| No external refs found! |