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  5. lcl|LHPG02000004.1_cds_PRW59387.1_7093

lcl|LHPG02000004.1_cds_PRW59387.1_7093 (PRW59387)


Aliases : PRW59387

Description : Pre-rRNA-processing esf1


Gene families : OG_01_0002787 (OrthoFinder) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000004.1_cds_PRW59387.1_7093
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001428.2 tig00001428_g8719.t1 No description available 0.07 OrthoFinder
Cre10.g452500 30790311 No description available 0.18 OrthoFinder
Cz18g13170.t1 No alias NUC153 [Interproscan]. 0.1 OrthoFinder
EOD17818 No alias Hypothetical protein [Ensembl]. 0.14 OrthoFinder
EOD22475 No alias Hypothetical protein [Ensembl]. 0.14 OrthoFinder
OT_10G02490.1 No alias Hypothetical protein 0.13 OrthoFinder
PTI_22G01050.1 No alias Hypothetical protein 0.02 OrthoFinder
Sro229_g092960.1 Contig429.g5800 Processing protein ESF1 0.15 OrthoFinder
TP04G03260.1 No alias NUC153 [Interproscan]. 0.1 OrthoFinder
Transcript_contig_1150 1150 Hypothetical protein 0.1 OrthoFinder
Transcript_contig_57624 57624 Hypothetical protein 0.08 OrthoFinder
Vocar.0004s0379.1 32889572 NUC153 [Interproscan]. 0.03 OrthoFinder
XM_002504327.1 MICPUN_61525, 61525 NUC153 [Interproscan]. 0.14 OrthoFinder
XM_003064776.1 MicpuC2_49308, 49308 NUC153 [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01002766.1_cds_GFH25258.1_19735 HaLaN_23194, GFH25258 NUC153 domain-containing protein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497655.1_6608 KAA8497655 Pre-rRNA-processing protein esf1 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012580 NUC153 879 905
No external refs found!