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  5. lcl|LHPG02000004.1_cds_PRW59185.1_7282

lcl|LHPG02000004.1_cds_PRW59185.1_7282 (PRW59185)


Aliases : PRW59185

Description : Sulfate ABC transporter ATP-binding isoform B


Gene families : OG_01_0000256 (OrthoFinder) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000004.1_cds_PRW59185.1_7282

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold109.102 109.102 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
SymbC1.scaffold160.30 160.30 Bacterial extracellular solute-binding protein; ABC... 0.02 OrthoFinder
SymbC1.scaffold2.1209 2.1209 Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl... 0.02 OrthoFinder
SymbC1.scaffold217.29 217.29 ABC-2 family transporter protein; HlyD family secretion... 0.04 OrthoFinder
SymbC1.scaffold540.18 540.18 Periplasmic binding protein; ABC transporter-like;... 0.02 OrthoFinder
SymbC1.scaffold73.50 73.50 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 116 256
IPR013611 Transp-assoc_OB_typ2 355 433
No external refs found!