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  5. lcl|LHPG02000004.1_cds_PRW58939.1_6857

lcl|LHPG02000004.1_cds_PRW58939.1_6857 (PRW58939)


Aliases : PRW58939

Description : LysM domain; NodB homology domain [Interproscan].


Gene families : OG_01_0001088 (OrthoFinder) Phylogenetic Tree(s): OG0001088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000004.1_cds_PRW58939.1_6857
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_54039 54039 NodB homology domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_61498 61498 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_6753 6753 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_78131 78131 NodB homology domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
BP GO:0002376 immune system process IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Enrichment
MF GO:0005375 copper ion transmembrane transporter activity IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006077 (1->6)-beta-D-glucan metabolic process IEP Enrichment
BP GO:0006078 (1->6)-beta-D-glucan biosynthetic process IEP Enrichment
BP GO:0006825 copper ion transport IEP Enrichment
BP GO:0006955 immune response IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009611 response to wounding IEP Enrichment
BP GO:0009617 response to bacterium IEP Enrichment
BP GO:0009620 response to fungus IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0035434 copper ion transmembrane transport IEP Enrichment
BP GO:0042742 defense response to bacterium IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Enrichment
BP GO:0050832 defense response to fungus IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
BP GO:0098542 defense response to other organism IEP Enrichment
InterPro domains Description Start Stop
IPR018392 LysM_dom 373 416
IPR002509 NODB_dom 56 184
No external refs found!