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  5. lcl|LHPG02000004.1_cds_PRW58777.1_7006

lcl|LHPG02000004.1_cds_PRW58777.1_7006 (PRW58777)


Aliases : PRW58777

Description : 40S ribosomal S15a-1


Gene families : OG_01_0003009 (OrthoFinder) Phylogenetic Tree(s): OG0003009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000004.1_cds_PRW58777.1_7006
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.110 tig00000158_g10212.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder
Cre05.g234637 30782975 Protein biosynthesis.cytosolic ribosome.small subunit... 0.35 OrthoFinder
Cz14g19140.t1 No alias Ribosomal protein S8 [Interproscan]. 0.22 OrthoFinder
Dusal.0068s00005.1 33187240 Ribosomal protein S8 [Interproscan]. 0.11 OrthoFinder
EOD16196 No alias Ribosomal protein S8 [Ensembl]. 0.04 OrthoFinder
EOD40032 No alias Ribosomal protein S8 [Ensembl]. 0.16 OrthoFinder
OT_01G02380.1 No alias Ribosomal protein S8 [Interproscan]. 0.25 OrthoFinder
PTI_26G00870.1 No alias Ribosomal protein S8 [Interproscan]. 0.3 OrthoFinder
Sro60_g034790.1 Contig797.g8956 40S ribosomal protein S15a 0.31 OrthoFinder
SymbC1.scaffold3882.8 3882.8 Ribosomal protein S8 [Interproscan]. 0.04 OrthoFinder
TP10G03670.1 No alias Ribosomal protein S8 [Interproscan]. 0.33 OrthoFinder
Transcript_contig_80036 80036 Ribosomal protein S8 [Interproscan]. 0.01 OrthoFinder
Vocar.0008s0416.1 32897070 Ribosomal protein S8 [Interproscan]. 0.02 OrthoFinder
XM_002507541.1 MICPUN_107532, 107532 Ribosomal protein S8 [Interproscan]. 0.19 OrthoFinder
XM_003056509.1 MicpuC2_31862, 31862 Ribosomal protein S8 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000519.1_cds_GFH12596.1_7073 HaLaN_08309, GFH12596 40S ribosomal protein S15a 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495085.1_3615 KAA8495085 40S ribosomal protein S15a 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
BP GO:0006658 phosphatidylserine metabolic process IEP Enrichment
BP GO:0006659 phosphatidylserine biosynthetic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
MF GO:0008430 selenium binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR000630 Ribosomal_S8 7 130
No external refs found!