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  5. lcl|LHPG02000003.1_cds_PRW60157.1_6321

lcl|LHPG02000003.1_cds_PRW60157.1_6321 (PRW60157)


Aliases : PRW60157

Description : DNA topoisomerase 3-beta isoform X1


Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000003.1_cds_PRW60157.1_6321
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
PTI_13G02890.1 No alias Zinc finger, CCHC-type; TOPRIM domain; DNA... 0.02 OrthoFinder
Sro287_g108620.1 Contig252.g3103 Topoisomerase 3-alpha 0.02 OrthoFinder
XM_002499819.1 MICPUN_79030, 79030 DNA topoisomerase, type IA, central; TOPRIM domain... 0.02 OrthoFinder
XM_003055242.1 MicpuC2_13292, 13292 TOPRIM domain; DNA topoisomerase, type IA, central... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
MF GO:0015079 potassium ion transmembrane transporter activity IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0071805 potassium ion transmembrane transport IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 734 1144
IPR006171 TOPRIM_domain 574 719
IPR003439 ABC_transporter-like_ATP-bd 1 121
IPR013525 ABC_2_trans 277 486
No external refs found!