lcl|LHPG02000003.1_cds_PRW59988.1_6338 (PRW59988)

Aliases : PRW59988

Description : Serine arginine-rich SC35-like splicing factor SCL30A isoform X1

Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000003.1_cds_PRW59988.1_6338
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000402.16	tig00000402_g193.t1	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder
EOD36735	No alias	RNA recognition motif domain; Zinc finger/thioredoxin...	0.02	OrthoFinder
Sro53_g031580.1	Contig1592.g14498	Cold-inducible RNA-binding protein	0.01	OrthoFinder
Sro979_g227190.1	Contig4114.g31401	29 kDa ribonucleoprotein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	Enrichment
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	Enrichment
MF	GO:0008242	omega peptidase activity	IEP	Enrichment
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Enrichment
BP	GO:0030001	metal ion transport	IEP	Enrichment
CC	GO:0031082	BLOC complex	IEP	Enrichment
CC	GO:0031083	BLOC-1 complex	IEP	Enrichment
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0101005	deubiquitinase activity	IEP	Enrichment
CC	GO:1905354	exoribonuclease complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	41	110

External Links

No external refs found!