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  5. lcl|LHPG02000003.1_cds_PRW59719.1_6399

lcl|LHPG02000003.1_cds_PRW59719.1_6399 (PRW59719)


Aliases : PRW59719

Description : SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A 1


Gene families : OG_01_0000314 (OrthoFinder) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000003.1_cds_PRW59719.1_6399
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494200 30791891 No description available 0.02 OrthoFinder
Cz02g34030.t1 No alias HNH endonuclease; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
Dusal.0622s00009.1 33200105 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder
EOD13647 No alias DNA topoisomerase, type IA, zn finger; HNH endonuclease;... 0.02 OrthoFinder
EOD34995 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
TP05G03440.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Vocar.0031s0070.1 32890086 Hypothetical protein 0.02 OrthoFinder
XM_003055085.1 MicpuC2_50566, 50566 SNF2 super family 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0007033 vacuole organization IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1905037 autophagosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR010666 Znf_GRF 638 663
IPR000330 SNF2_N 863 1103
IPR001650 Helicase_C 1150 1255
IPR003105 SRA_YDG 78 224
IPR001214 SET_dom 460 592
No external refs found!