lcl|LHPG02000003.1_cds_PRW59475.1_6280 (PRW59475)

Aliases : PRW59475

Description : Atp-binding cassette superfamily

Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000003.1_cds_PRW59475.1_6280
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020614.26	tig00020614_g12136.t1	ABC transporter G family member 9 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre12.g527100	30793034	ABC transporter G family member 28 OS=Arabidopsis thaliana	0.02	OrthoFinder
EOD13137	No alias	ABC transporter-like; ABC-2 type transporter [Interproscan].	0.02	OrthoFinder
PTI_02G01550.1	No alias	ABC transporter-like; ABC-2 type transporter [Interproscan].	0.02	OrthoFinder
Sro244_g097150.1	Contig2788.g22431	Putative white-brown complex homolog protein 30	0.02	OrthoFinder
Sro537_g162420.1	Contig1194.g11294	Putative white-brown complex homolog protein 30	0.03	OrthoFinder
SymbC1.scaffold131.10	131.10	ABC-2 type transporter [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Enrichment
BP	GO:0000725	recombinational repair	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
BP	GO:0006302	double-strand break repair	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006835	dicarboxylic acid transport	IEP	Enrichment
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Enrichment
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0015711	organic anion transport	IEP	Enrichment
BP	GO:0015740	C4-dicarboxylate transport	IEP	Enrichment
BP	GO:0015743	malate transport	IEP	Enrichment
BP	GO:0015849	organic acid transport	IEP	Enrichment
BP	GO:0046942	carboxylic acid transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	130	281
IPR013525	ABC_2_trans	429	637

External Links

No external refs found!