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  5. lcl|LHPG02000002.1_cds_PRW60855.1_4735

lcl|LHPG02000002.1_cds_PRW60855.1_4735 (PRW60855)


Aliases : PRW60855

Description : Vacuolar sorting-associated VTA1-like protein


Gene families : OG_01_0002689 (OrthoFinder) Phylogenetic Tree(s): OG0002689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000002.1_cds_PRW60855.1_4735
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000342.34 tig00000342_g24218.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder
Cz04g23180.t1 No alias Vta1, C-terminal; Vta1/callose synthase, N-terminal... 0.03 OrthoFinder
XM_003060223.1 MicpuC2_37521, 37521 Vta1, C-terminal; Vta1/callose synthase, N-terminal... 0.03 OrthoFinder
lcl|BLLF01000547.1_cds_GFH12856.1_7333 HaLaN_08621, GFH12856 Vacuolar protein sorting-associated protein VTA1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006378 mRNA polyadenylation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR039431 Vta1/CALS_N 12 150
IPR041212 Vta1_C 499 534
No external refs found!