lcl|LHPG02000002.1_cds_PRW60607.1_4698 (PRW60607)

Aliases : PRW60607

Description : 40S ribosomal S21-2

Gene families : OG_01_0003705 (OrthoFinder) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000002.1_cds_PRW60607.1_4698
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020780.14	tig00020780_g13766.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder
Cre03.g203450	30787782, RPS21	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder
Dusal.0001s00040.1	33198798	Ribosomal protein S21e [Interproscan].	0.2	OrthoFinder
EOD12033	No alias	Ribosomal protein S21e [Interproscan].	0.11	OrthoFinder
OT_16G01860.1	No alias	Ribosomal protein S21e [Interproscan].	0.2	OrthoFinder
PTI_25G00250.1	No alias	Ribosomal protein S21e [Interproscan].	0.24	OrthoFinder
Sro6_g004850.1	Contig175.g1990	40S ribosomal protein S21	0.27	OrthoFinder
SymbC1.scaffold2995.5	2995.5	Ribosomal protein S21e [Interproscan].	0.01	OrthoFinder
SymbC1.scaffold4516.5	4516.5	Ribosomal protein S21e [Interproscan].	0.01	OrthoFinder
TP04G05880.1	No alias	Ribosomal protein S21e [Interproscan].	0.2	OrthoFinder
Vocar.0011s0134.1	32895267	Ribosomal protein S21e [Interproscan].	0.06	OrthoFinder
XM_002506478.1	MICPUN_109558, 109558	Ribosomal protein S21e [Interproscan].	0.21	OrthoFinder
XM_003063433.1	MicpuC2_45937, 45937	Ribosomal protein S21e [Interproscan].	0.13	OrthoFinder
lcl\|BLLF01004584.1_cds_GFH29895.1_24372	HaLaN_28641, GFH29895	40S ribosomal protein S21	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498324.1_7277	KAA8498324	40S ribosomal protein S21	0.21	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006788	heme oxidation	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042168	heme metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
CC	GO:0005739	mitochondrion	IEP	Enrichment
BP	GO:0006658	phosphatidylserine metabolic process	IEP	Enrichment
BP	GO:0006659	phosphatidylserine biosynthetic process	IEP	Enrichment
BP	GO:0006873	cellular ion homeostasis	IEP	Enrichment
BP	GO:0006875	cellular metal ion homeostasis	IEP	Enrichment
BP	GO:0006879	cellular iron ion homeostasis	IEP	Enrichment
MF	GO:0008199	ferric iron binding	IEP	Enrichment
MF	GO:0008430	selenium binding	IEP	Enrichment
BP	GO:0008535	respiratory chain complex IV assembly	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016872	intramolecular lyase activity	IEP	Enrichment
BP	GO:0017004	cytochrome complex assembly	IEP	Enrichment
BP	GO:0030003	cellular cation homeostasis	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0032993	protein-DNA complex	IEP	Enrichment
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Enrichment
BP	GO:0033617	mitochondrial cytochrome c oxidase assembly	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Enrichment
BP	GO:0048878	chemical homeostasis	IEP	Enrichment
BP	GO:0050801	ion homeostasis	IEP	Enrichment
BP	GO:0055065	metal ion homeostasis	IEP	Enrichment
BP	GO:0055072	iron ion homeostasis	IEP	Enrichment
BP	GO:0055076	transition metal ion homeostasis	IEP	Enrichment
BP	GO:0055080	cation homeostasis	IEP	Enrichment
BP	GO:0055082	cellular chemical homeostasis	IEP	Enrichment
BP	GO:0098771	inorganic ion homeostasis	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR016053	Haem_Oase-like	180	338
IPR001931	Ribosomal_S21e	1	83

External Links

No external refs found!

lcl|LHPG02000002.1_cds_PRW60607.1_4698 (PRW60607)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation