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  5. lcl|LHPG02000002.1_cds_PRW60343.1_4236

lcl|LHPG02000002.1_cds_PRW60343.1_4236 (PRW60343)


Aliases : PRW60343

Description : Exosome complex component RRP42


Gene families : OG_01_0000474 (OrthoFinder) Phylogenetic Tree(s): OG0000474_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000002.1_cds_PRW60343.1_4236
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.29 tig00020780_g13782.t1 RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 OrthoFinder
Cre03.g188200 30786998 No description available 0.02 OrthoFinder
Dusal.0034s00013.1 33197185 Exoribonuclease, phosphorolytic domain 2;... 0.02 OrthoFinder
EOD35496 No alias Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.02 OrthoFinder
OT_08G03460.1 No alias Exoribonuclease, phosphorolytic domain 1;... 0.02 OrthoFinder
Sro1649_g288620.1 Contig3529.g27272 Complex component RRP45 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
CC GO:0030677 ribonuclease P complex IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
CC GO:0070449 elongin complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1902555 endoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 205 268
IPR001247 ExoRNase_PH_dom1 31 171
No external refs found!