lcl|LHPG02000001.1_cds_PRW61361.1_387 (PRW61361)


Aliases : PRW61361

Description : Left border a


Gene families : OG_01_0001088 (OrthoFinder) Phylogenetic Tree(s): OG0001088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW61361.1_387
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_53976 53976 NodB homology domain [Interproscan]. 0.09 OrthoFinder
Transcript_contig_57512 57512 NodB homology domain [Interproscan]. 0.06 OrthoFinder
Transcript_contig_57626 57626 NodB homology domain [Interproscan]. 0.05 OrthoFinder
Transcript_contig_57735 57735 NodB homology domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_61498 61498 Hypothetical protein 0.05 OrthoFinder
Transcript_contig_6753 6753 Hypothetical protein 0.05 OrthoFinder
Transcript_contig_78124 78124 NodB homology domain [Interproscan]. 0.04 OrthoFinder
Transcript_contig_79832 79832 NodB homology domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05840.1_5994 PRW05840 NodB homology domain [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA Interproscan
BP GO:0042742 defense response to bacterium IEA Interproscan
BP GO:0050832 defense response to fungus IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0045132 meiotic chromosome segregation IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
BP GO:0098813 nuclear chromosome segregation IEP Enrichment
BP GO:1903046 meiotic cell cycle process IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR001153 Barwin_dom 164 270
IPR002509 NODB_dom 377 471
No external refs found!