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  5. lcl|LHPG02000001.1_cds_PRW61325.1_498

lcl|LHPG02000001.1_cds_PRW61325.1_498 (PRW61325)


Aliases : PRW61325

Description : DNA polymerase V


Gene families : OG_01_0003983 (OrthoFinder) Phylogenetic Tree(s): OG0003983_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW61325.1_498
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.9 tig00021108_g18299.t1 No description available 0.03 OrthoFinder
Cre01.g012350 30788907 No description available 0.08 OrthoFinder
Cz09g27060.t1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
EOD16648 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.03 OrthoFinder
OT_04G04090.1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.05 OrthoFinder
Transcript_contig_78668 78668 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.05 OrthoFinder
Transcript_contig_78913 78913 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.04 OrthoFinder
Transcript_contig_89760 89760 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.04 OrthoFinder
Vocar.0002s0005.1 32890814 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.05 OrthoFinder
XM_002506074.1 MICPUN_104038, 104038 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.08 OrthoFinder
XM_003056723.1 MicpuC2_56167, 56167 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001343.1_cds_GFH18714.1_13191 HaLaN_15562, GFH18714 Expressed protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006835 dicarboxylic acid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015740 C4-dicarboxylate transport IEP Enrichment
BP GO:0015743 malate transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007015 DNA_pol_V/MYBBP1A 404 886
IPR007015 DNA_pol_V/MYBBP1A 3 363
No external refs found!