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  5. lcl|LHPG02000001.1_cds_PRW61272.1_154

lcl|LHPG02000001.1_cds_PRW61272.1_154 (PRW61272)


Aliases : PRW61272

Description : RRNA-processing fcf2-like


Gene families : OG_01_0004415 (OrthoFinder) Phylogenetic Tree(s): OG0004415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW61272.1_154
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cz07g30140.t1 No alias Fcf2 pre-rRNA processing, C-terminal [Interproscan]. 0.07 OrthoFinder
OT_17G01530.1 No alias Fcf2 pre-rRNA processing, C-terminal [Interproscan]. 0.05 OrthoFinder
PTI_11G02610.1 No alias Fcf2 pre-rRNA processing, C-terminal [Interproscan]. 0.07 OrthoFinder
Sro565_g167680.1 Contig2465.g20193 Deoxynucleotidyltransferase terminal-interacting protein 2 0.02 OrthoFinder
Vocar.0035s0071.1 32896783 Fcf2 pre-rRNA processing, C-terminal [Interproscan]. 0.03 OrthoFinder
XM_002502223.1 MICPUN_58846, 58846 Fcf2 pre-rRNA processing, C-terminal [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016540 protein autoprocessing IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR014810 Fcf2_C 318 410
No external refs found!