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  5. lcl|LHPG02000001.1_cds_PRW61221.1_155

lcl|LHPG02000001.1_cds_PRW61221.1_155 (PRW61221)


Aliases : PRW61221

Description : Ribosome maturation SBDS


Gene families : OG_01_0003253 (OrthoFinder) Phylogenetic Tree(s): OG0003253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000001.1_cds_PRW61221.1_155
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Sro708_g190690.1 Contig4523.g33873 Maturation protein SBDS 0.02 OrthoFinder
TP04G03240.1 No alias Ribosome maturation protein SBDS, C-terminal; Ribosome... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000347 THO complex IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005384 manganese ion transmembrane transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006000 fructose metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0030026 cellular manganese ion homeostasis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055071 manganese ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR018978 Ribosome_mat_Sdo1/SBDS_C 110 228
IPR019783 Ribosome_mat_Sdo1/SBDS_N 16 103
No external refs found!