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  5. Cpa|evm.model.tig00000478.34

Cpa|evm.model.tig00000478.34 (tig00000478_g1283.t1)


Aliases : tig00000478_g1283.t1

No description available


Gene families : OG_01_0008019 (OrthoFinder) Phylogenetic Tree(s): OG0008019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000478.34
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.101 tig00000383_g24711.t1 No description available 0.04 OrthoFinder
TP01G04760.1 No alias Pentatricopeptide repeat [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494167.1_4031 KAA8494167 Pentatricopeptide repeat-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009581 detection of external stimulus IEP Enrichment
BP GO:0009582 detection of abiotic stimulus IEP Enrichment
BP GO:0009583 detection of light stimulus IEP Enrichment
BP GO:0009584 detection of visible light IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0018298 protein-chromophore linkage IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR033443 PPR_long 491 585
IPR002885 Pentatricopeptide_repeat 168 196
IPR002885 Pentatricopeptide_repeat 627 685
IPR002885 Pentatricopeptide_repeat 60 84
IPR002885 Pentatricopeptide_repeat 209 235
IPR002885 Pentatricopeptide_repeat 745 767
IPR002885 Pentatricopeptide_repeat 99 148
No external refs found!