Cre17.g738300 (30782509, RPP1)


Aliases : 30782509, RPP1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP1 component


Gene families : OG_01_0003895 (OrthoFinder) Phylogenetic Tree(s): OG0003895_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g738300
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000342.4 tig00000342_g24192.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder
Cz04g14050.t1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.27 OrthoFinder
Dusal.0143s00014.1 33194270 60s Acidic ribosomal protein [Interproscan]. 0.16 OrthoFinder
EOD08635 No alias 60s Acidic ribosomal protein [Interproscan]. 0.01 OrthoFinder
OT_16G01900.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.05 OrthoFinder
PTI_05G03770.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.32 OrthoFinder
Sro608_g174750.1 Contig3978.g30558 60s Acidic ribosomal protein [Interproscan]. 0.43 OrthoFinder
TP09G01390.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.06 OrthoFinder
Vocar.0009s0346.1 32893436 60s Acidic ribosomal protein [Interproscan]. 0.24 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60291.1_4729 PRW60291 Regulator of chromosome condensation RCC1 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495017.1_3547 KAA8495017 60S acidic ribosomal protein P1 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005750 mitochondrial respiratory chain complex III IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0045275 respiratory chain complex III IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
CC GO:0098803 respiratory chain complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!