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  5. Cre17.g737250

Cre17.g737250 (30781623, EFG5)


Aliases : 30781623, EFG5

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).SNU114/U5-116kDa snRNP component


Gene families : OG_01_0000224 (OrthoFinder) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g737250
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.34 tig00000704_g3322.t1 Elongation factor 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020904.69 tig00020904_g15202.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder
Cpa|evm.model.tig00021464.39 tig00021464_g21745.t1 Protein biosynthesis.translation elongation.eEF2... 0.02 OrthoFinder
Cz02g31260.t1 No alias Transcription factor, GTP-binding domain [Interproscan]. 0.03 OrthoFinder
Cz02g31270.t1 No alias Translation elongation factor EFG/EF2, domain IV;... 0.04 OrthoFinder
Cz04g12070.t1 No alias Translation elongation factor EFTu-like, domain 2;... 0.07 OrthoFinder
Cz05g09170.t1 No alias Translation elongation factor EFTu-like, domain 2;... 0.02 OrthoFinder
EOD10726 No alias Elongation factor EFG, domain V-like; 116kDa U5 small... 0.05 OrthoFinder
OT_07G00360.1 No alias Translation elongation factor EFTu-like, domain 2;... 0.02 OrthoFinder
PTI_06G04210.1 No alias Elongation factor EFG, domain V-like; Transcription... 0.05 OrthoFinder
Sro1027_g233090.1 Contig109.g1260 109 kDa U5 small nuclear ribonucleoprotein component GFL 0.05 OrthoFinder
SymbC1.scaffold738.2 738.2 Transcription factor, GTP-binding domain; Elongation... 0.02 OrthoFinder
Transcript_contig_54328 54328 Translation elongation factor EFTu-like, domain 2;... 0.04 OrthoFinder
Vocar.0017s0173.1 32891421 Elongation factor EFG, domain V-like; 116kDa U5 small... 0.06 OrthoFinder
XM_002499484.1 MICPUN_97033, 97033 Elongation factor tu gtp-binding domain protein 2 (EF-TU) 0.04 OrthoFinder
XM_003058246.1 MicpuC2_47165, 47165 Elongation factor tu gtp-binding domain protein 2 (EF-TU) 0.03 OrthoFinder
XM_003059631.1 MicpuC2_27460, 27460 Elongation factor EFG, domain V-like; Transcription... 0.03 OrthoFinder
lcl|BLLF01002710.1_cds_GFH25076.1_19553 HaLaN_22980, GFH25076 Tr-type G domain-containing protein 0.03 OrthoFinder
lcl|BLLF01006069.1_cds_GFH31923.1_26400 HaLaN_31054, GFH31923 Elongation factor 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60836.1_4725 PRW60836 116 kDa U5 small nuclear ribonucleo component-like isoform A 0.07 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44991.1_1795 PRW44991 Elongation factor 2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
InterPro domains Description Start Stop
IPR000640 EFG_V-like 843 931
IPR000795 T_Tr_GTP-bd_dom 137 335
IPR005517 Transl_elong_EFG/EF2_IV 727 840
IPR004161 EFTu-like_2 509 582
IPR031950 EFTUD2_N 3 116
No external refs found!