Cre17.g734400 (30781960, CUL3)

Aliases : 30781960, CUL3

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.CUL1/CUL2 scaffold component

Gene families : OG_01_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre17.g734400
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000157.110	tig00000157_g9709.t1	Cullin-4 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cpa\|evm.model.tig00000157.111	tig00000157_g9709.t1	Cullin-4 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00020563.190	tig00020563_g11392.t1	Cullin-4 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00020563.191	tig00020563_g11392.t1	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder
Cpa\|evm.model.tig00020934.33	tig00020934_g16100.t1	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder
Cz01g09050.t1	No alias	Cullin protein, neddylation domain; Cullin, N-terminal...	0.02	OrthoFinder
Dusal.0203s00008.1	33199265	Cullin protein, neddylation domain; Cullin, N-terminal...	0.03	OrthoFinder
EOD14996	No alias	Cullin, N-terminal; Cullin protein, neddylation domain...	0.02	OrthoFinder
EOD28450	No alias	Cullin, N-terminal; Cullin protein, neddylation domain...	0.03	OrthoFinder
Sro1486_g276660.1	Contig1746.g15552	Cullin-3	0.04	OrthoFinder
Transcript_contig_53963	53963	Cullin protein, neddylation domain; Cullin, N-terminal...	0.03	OrthoFinder
Transcript_contig_54372	54372	Cullin protein, neddylation domain; Cullin, N-terminal...	0.01	OrthoFinder
Transcript_contig_54536	54536	Cullin protein, neddylation domain; Cullin, N-terminal...	0.01	OrthoFinder
Vocar.0006s0031.1	32894100	Cullin protein, neddylation domain; Cullin, N-terminal...	0.05	OrthoFinder
XM_002499426.1	MICPUN_56365, 56365	Cullin protein, neddylation domain; Cullin, N-terminal...	0.01	OrthoFinder
XM_002501559.1	MICPUN_106836, 106836	Cullin protein, neddylation domain; Cullin, N-terminal...	0.03	OrthoFinder
XM_003062494.1	MicpuC2_45869, 45869	Cullin protein, neddylation domain; Cullin, N-terminal...	0.05	OrthoFinder
lcl\|BLLF01001017.1_cds_GFH16576.1_11053	HaLaN_13019, GFH16576	CULLIN_2 domain-containing protein	0.02	OrthoFinder
lcl\|BLLF01002024.1_cds_GFH22359.1_16836	HaLaN_19814, GFH22359	CULLIN_2 domain-containing protein	0.02	OrthoFinder
lcl\|LHPG02000021.1_cds_PRW20903.1_5012	PRW20903	Cullin-1	0.03	OrthoFinder
lcl\|LHPG02000023.1_cds_PRW20452.1_5392	PRW20452	Cullin family	0.02	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493347.1_9648	KAA8493347	Cullin-3A	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000813	ESCRT I complex	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006606	protein import into nucleus	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006913	nucleocytoplasmic transport	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0033365	protein localization to organelle	IEP	Enrichment
BP	GO:0034504	protein localization to nucleus	IEP	Enrichment
BP	GO:0034613	cellular protein localization	IEP	Enrichment
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0036452	ESCRT complex	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0051169	nuclear transport	IEP	Enrichment
BP	GO:0051170	import into nucleus	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0070727	cellular macromolecule localization	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0072594	establishment of protein localization to organelle	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
CC	GO:0098796	membrane protein complex	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	13	650
IPR019559	Cullin_neddylation_domain	677	739

External Links

No external refs found!

Cre17.g734400 (30781960, CUL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation