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Aliases : 30782801
No description available
Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre17.g729150 | |
| Cluster | HCCA: Cluster_155 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020553.146 | tig00020553_g10637.t1 | Serine/arginine-rich splicing factor SR45a... | 0.01 | OrthoFinder | |
| Cpa|evm.model.tig00021433.15 | tig00021433_g21269.t1 | No description available | 0.01 | OrthoFinder | |
| Cz05g06060.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.04 | OrthoFinder | |
| Cz17g16110.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| Dusal.0108s00022.1 | 33189529 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Sro1655_g289020.1 | Contig2908.g23148 | Stimulation factor subunit 2 tau variant | 0.01 | OrthoFinder | |
| TP01G08220.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0001s0729.1 | 32886056 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002504161.1 | MICPUN_76997, 76997 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002508741.1 | MICPUN_91839, 91839 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01001729.1_cds_GFH20937.1_15414 | HaLaN_18145, GFH20937 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 0.02 | OrthoFinder | |
| lcl|BLLF01002210.1_cds_GFH23182.1_17659 | HaLaN_20760, GFH23182 | RRM domain-containing protein | 0.04 | OrthoFinder | |
| lcl|BLLF01007141.1_cds_GFH32791.1_27268 | HaLaN_32072, GFH32791 | RRM domain-containing protein | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005737 | cytoplasm | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Enrichment |
| MF | GO:0016874 | ligase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| BP | GO:0046034 | ATP metabolic process | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 19 | 87 |
| No external refs found! |