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  5. Cre17.g727700

Cre17.g727700 (30782559)


Aliases : 30782559

Description : DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g727700
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
PTI_09G04100.1 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.02 OrthoFinder
Sro1581_g283790.1 Contig585.g7354 Dependent RNA helicase 0.02 OrthoFinder
XM_002507844.1 MICPUN_97749, 97749 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
XM_003056881.1 MicpuC2_56534, 56534 DEAD/DEAH box RNA helicase 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59107.1_6866 PRW59107 DEAD-box ATP-dependent RNA helicase 7 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492593.1_9286 KAA8492593 Nucleolar RNA helicase 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 106 280
IPR001650 Helicase_C 331 430
No external refs found!