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  5. Cre17.g719000

Cre17.g719000 (30782166)


Aliases : 30782166

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.UAP56 helicase component


Gene families : OG_01_0003167 (OrthoFinder) Phylogenetic Tree(s): OG0003167_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g719000
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001376.20 tig00001376_g8541.t1 RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder
Cz03g22040.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
EOD38224 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
PTI_32G00070.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Sro78_g042340.1 Contig1698.g15210 RNA helicase SUB2 0.02 OrthoFinder
Transcript_contig_54317 54317 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61181.1_416 PRW61181 DEAD-box ATP-dependent RNA helicase 15-like isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 270 390
IPR011545 DEAD/DEAH_box_helicase_dom 65 230
No external refs found!