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  5. Cre17.g717800

Cre17.g717800 (30782058)


Aliases : 30782058

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin


Gene families : OG_01_0006474 (OrthoFinder) Phylogenetic Tree(s): OG0006474_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g717800
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cz03g21200.t1 No alias Nucleoporin interacting component Nup93/Nic96 [Interproscan]. 0.05 OrthoFinder
EOD09500 No alias Nucleoporin interacting component Nup93/Nic96 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_657 657 Nucleoporin interacting component Nup93/Nic96 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59315.1_7135 PRW59315 Nuclear pore complex NUP93A-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR007231 Nucleoporin_int_Nup93/Nic96 243 378
IPR007231 Nucleoporin_int_Nup93/Nic96 457 909
No external refs found!