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  5. Cre17.g713400

Cre17.g713400 (30781819)


Aliases : 30781819

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g713400
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.27 tig00021108_g18317.t1 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g567700 30783996 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.15 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.17 OrthoFinder
Cz02g02050.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.25 OrthoFinder
Cz05g04180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.15 OrthoFinder
Cz07g08180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.14 OrthoFinder
Cz08g27130.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.13 OrthoFinder
Cz18g11100.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.14 OrthoFinder
Dusal.0002s00036.1 33187941 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.1 OrthoFinder
Dusal.0093s00031.1 33185335 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.08 OrthoFinder
Dusal.0093s00037.1 33185342 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.07 OrthoFinder
Dusal.0152s00023.1 33186201 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.1 OrthoFinder
Dusal.0165s00017.1 33193347 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.1 OrthoFinder
Dusal.0322s00015.1 33197808 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.08 OrthoFinder
Dusal.0688s00003.1 33202688 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.13 OrthoFinder
Dusal.0806s00004.1 33190343 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
EOD08304 No alias Putative histone H2A [Ensembl]. 0.1 OrthoFinder
EOD11956 No alias Putative histone H2A [Ensembl]. 0.07 OrthoFinder
EOD14007 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.01 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.12 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.12 OrthoFinder
OT_02G00110.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
OT_08G01910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.11 OrthoFinder
OT_12G00910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.06 OrthoFinder
OT_16G01100.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.14 OrthoFinder
PTI_06G01940.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.06 OrthoFinder
PTI_06G02110.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.05 OrthoFinder
Sro120_g058300.1 Contig2411.g19708 H2A.z 0.03 OrthoFinder
Sro311_g114190.1 Contig909.g9534 Histone H2A 0.01 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.06 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.05 OrthoFinder
TP03G01190.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
TP05G07700.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
TP07G03180.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.05 OrthoFinder
Vocar.0001s1633.1 32885235 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0002s0391.1 32890987 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.13 OrthoFinder
Vocar.0002s0609.1 32891207 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0006s0196.1 32893915 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0016s0271.1 32898098 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0016s0282.1 32897978 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Vocar.0018s0027.1 32898733 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0027s0138.1 32887219 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0027s0147.1 32887249 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0028s0100.1 32895572 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
XM_002501356.1 MICPUN_81242, 81242 Histone H2A 0.05 OrthoFinder
XM_002503584.1 MICPUN_83469, 83469 Histone H2A 0.03 OrthoFinder
XM_003054928.1 MicpuC2_12375, 12375 Histone H2A 0.1 OrthoFinder
XM_003058838.1 MicpuC2_17393, 17393 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.1 OrthoFinder
XM_003063174.1 MicpuC2_11887, 11887 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.06 OrthoFinder
lcl|BLLF01000678.1_cds_GFH14026.1_8503 HaLaN_09999, GFH14026 Histone H2A 0.03 OrthoFinder
lcl|BLLF01001229.1_cds_GFH17968.1_12445 HaLaN_14697, GFH17968 Histone H2A 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60758.1_4580 PRW60758 Putative histone H2A variant 3 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56948.1_9006 PRW56948 Histone H2A 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57339.1_9052 PRW57339 Histone H2A 0.05 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32875.1_3737 PRW32875 Histone H2A 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32926.1_3778 PRW32926 Histone H2A 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32953.1_3761 PRW32953 Histone H2A 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33066.1_3814 PRW33066 Histone H2A 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492219.1_5402 KAA8492219 Histone H2A.V 0.07 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 91 124
IPR007125 Histone_H2A/H2B/H3 9 88
No external refs found!