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  5. Cre17.g711750

Cre17.g711750 (30781954)


Aliases : 30781954

Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g711750
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.18 tig00000944_g5940.t1 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.2 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.14 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.18 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.13 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.15 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.1 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.1 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.1 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.1 OrthoFinder
EOD34128 No alias Hypothetical protein [Ensembl]. 0.05 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.09 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.08 OrthoFinder
OT_12G00920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.07 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.18 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.07 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.07 OrthoFinder
Sro1563_g282700.1 Contig1017.g10180 Histone H2B 0.07 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.12 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.15 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
Vocar.0001s0460.1 32886156 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0881.1 32885389 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Vocar.0002s0392.1 32891126 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0005s0053.1 32884040 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0016s0272.1 32898185 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Vocar.0016s0281.1 32897879 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0027s0139.1 32887089 Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
Vocar.0027s0148.1 32887083 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0028s0099.1 32895722 Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
XM_002503927.1 MICPUN_108622, 108622 Histone H2B 0.03 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.09 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.15 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60378.1_4501 PRW60378 Histone H2B 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56968.1_9099 PRW56968 Histone 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57107.1_9026 PRW57107 Histone 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57308.1_9005 PRW57308 Histone 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57429.1_9063 PRW57429 Histone 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33046.1_3813 PRW33046 Histone 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498015.1_6968 KAA8498015 Histone H2B type 1-M 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 4 129
No external refs found!