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  5. Cre17.g711650

Cre17.g711650 (30782117, NUD1)


Aliases : 30782117, NUD1

Description : Protein BOBBER 1 OS=Arabidopsis thaliana


Gene families : OG_01_0001993 (OrthoFinder) Phylogenetic Tree(s): OG0001993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g711650
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Dusal.0042s00001.1 33189876 CS domain [Interproscan]. 0.05 OrthoFinder
EOD41734 No alias CS domain; NudC N-terminal domain [Interproscan]. 0.02 OrthoFinder
PTI_01G09050.1 No alias CS domain; NudC N-terminal domain [Interproscan]. 0.02 OrthoFinder
PTI_13G02450.1 No alias CS domain; NudC N-terminal domain [Interproscan]. 0.02 OrthoFinder
Sro2053_g312690.1 Contig2326.g19188 Nuclear migration protein nudC 0.07 OrthoFinder
Sro864_g212660.1 Contig2395.g19638 Nuclear migration protein nudC 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0110154 RNA decapping IEP Enrichment
BP GO:0110156 methylguanosine-cap decapping IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007052 CS_dom 186 259
No external refs found!