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  5. Cre17.g708300

Cre17.g708300 (30782753, RPN12)


Aliases : 30782753, RPN12

Description : Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN12 regulatory component


Gene families : OG_01_0002859 (OrthoFinder) Phylogenetic Tree(s): OG0002859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g708300
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000545.18 tig00000545_g1991.t1 Protein degradation.26S proteasome.regulatory... 0.18 OrthoFinder
Cz03g40080.t1 No alias CSN8/PSMD8/EIF3K [Interproscan]. 0.16 OrthoFinder
Dusal.0132s00014.1 33203679 CSN8/PSMD8/EIF3K [Interproscan]. 0.02 OrthoFinder
EOD28326 No alias CSN8/PSMD8/EIF3K [Interproscan]. 0.01 OrthoFinder
PTI_09G00670.1 No alias CSN8/PSMD8/EIF3K [Interproscan]. 0.07 OrthoFinder
Sro103_g052440.1 Contig308.g4041 ATPase regulatory subunit 8 0.35 OrthoFinder
Transcript_contig_58484 58484 CSN8/PSMD8/EIF3K [Interproscan]. 0.02 OrthoFinder
Vocar.0005s0416.1 32884075 CSN8/PSMD8/EIF3K [Interproscan]. 0.04 OrthoFinder
XM_002505919.1 MICPUN_106499, 106499 CSN8/PSMD8/EIF3K [Interproscan]. 0.02 OrthoFinder
XM_003057142.1 MicpuC2_25533, 25533 CSN8/PSMD8/EIF3K [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01003601.1_cds_GFH27751.1_22228 HaLaN_26126, GFH27751 26S proteasome regulatory subunit 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59293.1_7112 PRW59293 26S proteasome non-ATPase regulatory subunit 8-like protein A 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495381.1_1379 KAA8495381 26S proteasome non-ATPase regulatory subunit 8-like A 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR033464 CSN8_PSD8_EIF3K 107 232
No external refs found!