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  5. Cre16.g691900

Cre16.g691900 (30776864)


Aliases : 30776864

Description : RNA processing.RNA modification.pseudouridylation.TruA-type tRNA pseudouridine synthase


Gene families : OG_01_0001270 (OrthoFinder) Phylogenetic Tree(s): OG0001270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g691900
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000157.59 tig00000157_g9646.t1 Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g10020.t1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
Cz11g12070.t1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.04 OrthoFinder
Dusal.0448s00005.1 33185729 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.05 OrthoFinder
OT_16G02630.1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.02 OrthoFinder
OT_18G00720.1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.03 OrthoFinder
PTI_11G00610.1 No alias Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.11 OrthoFinder
Sro83_g044530.1 Contig4450.g33427 Pseudouridine(27/28) synthase 0.03 OrthoFinder
Transcript_contig_57035 57035 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.01 OrthoFinder
Vocar.0019s0103.1 32892839 Hypothetical protein 0.04 OrthoFinder
XM_003063687.1 MicpuC2_3609, 3609 Pseudouridine synthase I, TruA, alpha/beta domain [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01005011.1_cds_GFH30598.1_25075 HaLaN_29481, GFH30598 Protein kinase domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 424 506
No external refs found!