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  5. Cre16.g683793

Cre16.g683793 (30777184)


Aliases : 30777184

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component


Gene families : OG_01_0002850 (OrthoFinder) Phylogenetic Tree(s): OG0002850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g683793
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.62 tig00020961_g16684.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder
Cz07g04070.t1 No alias Pescadillo [Interproscan]. 0.21 OrthoFinder
Dusal.0374s00011.1 33192015 Pescadillo [Interproscan]. 0.07 OrthoFinder
EOD20302 No alias Pescadillo [Interproscan]. 0.02 OrthoFinder
EOD41602 No alias Pescadillo [Interproscan]. 0.17 OrthoFinder
OT_01G06050.1 No alias Pescadillo; BRCT domain [Interproscan]. 0.16 OrthoFinder
PTI_13G00670.1 No alias Pescadillo [Interproscan]. 0.21 OrthoFinder
Sro810_g205800.1 Contig3420.g26658 Pescadillo homolog 0.2 OrthoFinder
TP06G07510.1 No alias Pescadillo; BRCT domain [Interproscan]. 0.07 OrthoFinder
Transcript_contig_192 192 Pescadillo [Interproscan]. 0.09 OrthoFinder
Vocar.0023s0027.1 32883220 Pescadillo [Interproscan]. 0.08 OrthoFinder
XM_002508693.1 MICPUN_66594, 66594 Pescadillo [Interproscan]. 0.03 OrthoFinder
XM_003062980.1 MicpuC2_44858, 44858 Pescadillo; BRCT domain [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01009235.1_cds_GFH33660.1_28137 HaLaN_33062, GFH33660 Pescadillo homolog 0.07 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18309.1_5807 PRW18309 Pescadillo-family BRCT domain-containing 0.18 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495748.1_1746 KAA8495748 Pescadillo-like 0.1 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR010613 PES 7 263
No external refs found!