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Aliases : 30777798
Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2A snRNP component
Gene families : OG_01_0004993 (OrthoFinder) Phylogenetic Tree(s): OG0004993_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre16.g679600 | |
| Cluster | HCCA: Cluster_110 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000241.28 | tig00000241_g20886.t1 | U2 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cz03g14020.t1 | No alias | Leucine-rich repeat [Interproscan]. | 0.05 | OrthoFinder | |
| Sro102_g051900.1 | Contig319.g4234 | U2 small nuclear ribonucleoprotein A | 0.02 | OrthoFinder | |
| TP13G02380.1 | No alias | Leucine-rich repeat [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003057174.1 | MicpuC2_11284, 11284 | Leucine-rich repeat [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57437.1_8830 | PRW57437 | U2 small nuclear ribonucleo A | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003743 | translation initiation factor activity | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
| BP | GO:0016579 | protein deubiquitination | IEP | Enrichment |
| MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Enrichment |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |