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  5. Cre16.g673700

Cre16.g673700 (30776822)


Aliases : 30776822

No description available


Gene families : OG_01_0004216 (OrthoFinder) Phylogenetic Tree(s): OG0004216_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g673700
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021357.35 tig00021357_g20763.t1 No description available 0.07 OrthoFinder
Cz12g01040.t1 No alias AARP2CN; Ribosome biogenesis protein BMS1/TSR1,... 0.25 OrthoFinder
EOD14891 No alias Ribosome biogenesis protein BMS1/TSR1, C-terminal [Interproscan]. 0.09 OrthoFinder
OT_05G01110.1 No alias AARP2CN; Ribosome biogenesis protein BMS1/TSR1,... 0.12 OrthoFinder
PTI_01G04030.1 No alias Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.27 OrthoFinder
Sro750_g196960.1 Contig993.g10031 Processing protein TSR1 homolog 0.24 OrthoFinder
TP13G00390.1 No alias Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.13 OrthoFinder
Vocar.0018s0036.1 32898462 Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.08 OrthoFinder
lcl|BLLF01002205.1_cds_GFH23161.1_17638 HaLaN_20731, GFH23161 Bms1-type G domain-containing protein 0.08 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61435.1_318 PRW61435 Pre-rRNA-processing TSR1-like protein 0.17 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499720.1_8673 KAA8499720 Pre-rRNA-processing protein TSR1-like 0.11 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012948 AARP2CN 264 366
IPR007034 BMS1_TSR1_C 584 891
No external refs found!