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Aliases : 30777721
Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm3 component
Gene families : OG_01_0004585 (OrthoFinder) Phylogenetic Tree(s): OG0004585_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre16.g662300 | |
| Cluster | HCCA: Cluster_70 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020927.50 | tig00020927_g15980.t1 | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | OrthoFinder | |
| EOD14715 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
| OT_14G00370.1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.03 | OrthoFinder | |
| PTI_28G00710.1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.04 | OrthoFinder | |
| Sro428_g140910.1 | Contig2589.g21019 | Sm-like protein LSm3 | 0.02 | OrthoFinder | |
| XM_003063581.1 | MicpuC2_36568, 36568 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496659.1_388 | KAA8496659 | U6 snRNA-associated Sm-like protein LSm3 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006405 | RNA export from nucleus | IEP | Enrichment |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| CC | GO:0008541 | proteasome regulatory particle, lid subcomplex | IEP | Enrichment |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009143 | nucleoside triphosphate catabolic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Enrichment |
| CC | GO:0016272 | prefoldin complex | IEP | Enrichment |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:0046434 | organophosphate catabolic process | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| BP | GO:0050657 | nucleic acid transport | IEP | Enrichment |
| BP | GO:0050658 | RNA transport | IEP | Enrichment |
| BP | GO:0051028 | mRNA transport | IEP | Enrichment |
| BP | GO:0051168 | nuclear export | IEP | Enrichment |
| BP | GO:0051169 | nuclear transport | IEP | Enrichment |
| BP | GO:0051236 | establishment of RNA localization | IEP | Enrichment |
| CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | Enrichment |
| BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Enrichment |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
| CC | GO:1990234 | transferase complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 17 | 93 |
| No external refs found! |