Cre15.g640250 (30783778)

Aliases : 30783778

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.pre-60S subunit nuclear export.NMD3 export factor

Gene families : OG_01_0001599 (OrthoFinder) Phylogenetic Tree(s): OG0001599_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Cre15.g640250
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cz03g09100.t1 No alias Nmd3, N-terminal [Interproscan]. 0.05 OrthoFinder
EOD17554 No alias Nmd3, N-terminal [Interproscan]. 0.02 OrthoFinder
OT_16G01030.1 No alias Nmd3, N-terminal [Interproscan]. 0.08 OrthoFinder
PTI_22G00570.1 No alias Nmd3, N-terminal [Interproscan]. 0.12 OrthoFinder
Sro84_g044850.1 Contig220.g2618 Ribosomal export protein NMD3 0.1 OrthoFinder
TP07G05980.1 No alias Nmd3, N-terminal [Interproscan]. 0.03 OrthoFinder
Transcript_contig_1527 1527 Nmd3, N-terminal [Interproscan]. 0.01 OrthoFinder
XM_003063141.1 MicpuC2_22366, 22366 Nmd3, N-terminal [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000667.1_cds_GFH13918.1_8395 HaLaN_09884, GFH13918 60S ribosomal export protein NMD3 0.03 OrthoFinder
lcl|BLLF01001171.1_cds_GFH17585.1_12062 HaLaN_14247, GFH17585 60S ribosomal export protein NMD3 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56676.1_9743 PRW56676 60S ribosomal export NMD3 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007064 Nmd3_N 22 249
No external refs found!