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  5. Cre14.g633650

Cre14.g633650 (30776534, PRP6)


Aliases : 30776534, PRP6

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF6/PRP1/STA1 protein component


Gene families : OG_01_0001986 (OrthoFinder) Phylogenetic Tree(s): OG0001986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g633650
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000880.19 tig00000880_g5175.t1 Protein STABILIZED1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz07g30240.t1 No alias PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.06 OrthoFinder
EOD22460 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.05 OrthoFinder
OT_14G03060.1 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.02 OrthoFinder
PTI_08G04110.1 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.03 OrthoFinder
Sro987_g228260.1 Contig1137.g10933 mRNA-processing factor 6 0.02 OrthoFinder
TP06G05060.1 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.02 OrthoFinder
Vocar.0022s0221.1 32891963 PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.05 OrthoFinder
XM_003059615.1 MicpuC2_70858, 70858 MRNA splicing protein 0.05 OrthoFinder
lcl|BLLF01000031.1_cds_GFH06287.1_764 HaLaN_00894, GFH06287 TPR_REGION domain-containing protein 0.01 OrthoFinder
lcl|BLLF01001078.1_cds_GFH16975.1_11452 HaLaN_13502, GFH16975 TPR_REGION domain-containing protein 0.01 OrthoFinder
lcl|BLLF01003223.1_cds_GFH26737.1_21214 HaLaN_24933, GFH26737 TPR_REGION domain-containing protein 0.02 OrthoFinder
lcl|BLLF01003223.1_cds_GFH26738.1_21215 HaLaN_24934, GFH26738 TPR_REGION domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56239.1_10024 PRW56239 STABILIZED1 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010491 PRP1_N 27 172
No external refs found!