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  5. Cre14.g618860

Cre14.g618860 (30776654)


Aliases : 30776654

Description : Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component


Gene families : OG_01_0002304 (OrthoFinder) Phylogenetic Tree(s): OG0002304_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g618860
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.26 tig00000194_g14752.t1 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.02 OrthoFinder
Cz03g03150.t1 No alias Helicase, C-terminal; DBINO domain; SNF2-related,... 0.03 OrthoFinder
Cz03g19100.t1 No alias Helicase/SANT-associated domain; SNF2-related,... 0.05 OrthoFinder
EOD19494 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
PTI_08G02450.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
Sro757_g197940.1 Contig322.g4283 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 0.03 OrthoFinder
Transcript_contig_57354 57354 Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
Transcript_contig_78945 78945 Hypothetical protein 0.02 OrthoFinder
Vocar.0021s0130.1 32895939 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
XM_002504492.1 MICPUN_104934, 104934 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61598.1_386 PRW61598 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform B 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500058.1_9011 KAA8500058 Putative DNA helicase INO80 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492875.1_2611 KAA8492875 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 1155 1416
IPR014012 HSA_dom 262 327
IPR001650 Helicase_C 1858 1967
No external refs found!