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  5. Cre13.g586916

Cre13.g586916 (30783868)


Aliases : 30783868

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g586916
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.16 tig00000402_g193.t1 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder
Cpa|evm.model.tig00000826.12 tig00000826_g4577.t1 Glycine-rich RNA-binding protein 4, mitochondrial... 0.02 OrthoFinder
Cz05g06060.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz06g28140.t1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Dusal.0322s00004.1 33197814 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
EOD42035 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_3626 3626 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_62595 62595 Transcription termination and cleavage factor,... 0.01 OrthoFinder
Vocar.0001s0026.1 32885509 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Vocar.0001s0143.1 32885297 RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
Vocar.0001s1410.1 32885138 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0004s0355.1 32889625 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Vocar.0009s0275.1 32893396 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0037s0092.1 32897541 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 53 122
No external refs found!