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  5. Cre13.g565850

Cre13.g565850 (30784724, COPA1)


Aliases : 30784724, COPA1

Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.alpha subunit


Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g565850
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.152 tig00000144_g9146.t1 Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cz02g40240.t1 No alias Coatomer, alpha subunit, C-terminal [Interproscan]. 0.02 OrthoFinder
Cz02g40250.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Dusal.1106s00001.1 33203686 Coatomer, alpha subunit, C-terminal [Interproscan]. 0.02 OrthoFinder
Dusal.1106s00002.1 33203688 Coatomer, WD associated region [Interproscan]. 0.02 OrthoFinder
Dusal.1106s00003.1 33203689 WD40 repeat [Interproscan]. 0.02 OrthoFinder
EOD07013 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.06 OrthoFinder
EOD15797 No alias COPA1, alpha subunit of the coatomer [Ensembl]. 0.04 OrthoFinder
OT_04G01560.1 No alias Coatomer, WD associated region; Coatomer, alpha subunit,... 0.02 OrthoFinder
Sro669_g184560.1 Contig2091.g17828 Coatomer subunit alpha 0.11 OrthoFinder
TP06G03960.1 No alias Coatomer, alpha subunit, C-terminal; Coatomer, WD... 0.05 OrthoFinder
Transcript_contig_89172 89172 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Vocar.0028s0031.1 32895618 WD40 repeat; Coatomer, alpha subunit, C-terminal;... 0.06 OrthoFinder
XM_002501848.1 MICPUN_106869, 106869 Coatomer protein complex 0.02 OrthoFinder
XM_003057597.1 MicpuC2_45432, 45432 Coatomer, WD associated region; Coatomer, alpha subunit,... 0.02 OrthoFinder
lcl|BLLF01001654.1_cds_GFH20541.1_15018 HaLaN_17680, GFH20541 Coatomer subunit alpha 0.03 OrthoFinder
lcl|BLLF01001969.1_cds_GFH22100.1_16577 HaLaN_19511, GFH22100 Coatomer subunit alpha 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58160.1_7595 PRW58160 Coatomer subunit alpha-1 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491996.1_5004 KAA8491996 Coatomer subunit alpha 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 242 277
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 199 232
IPR010714 Coatomer_asu_C 848 1242
IPR006692 Coatomer_WD-assoc_reg 341 769
No external refs found!