Cre12.g553750 (30793213)


Aliases : 30793213

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor


Gene families : OG_01_0001291 (OrthoFinder) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g553750
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001154.10 tig00001154_g7273.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cz07g11130.t1 No alias K Homology domain, type 1; Splicing factor 1,... 0.03 OrthoFinder
XM_003061317.1 MicpuC2_50949, 50949 K Homology domain, type 1; Splicing factor 1,... 0.01 OrthoFinder
lcl|BLLF01000769.1_cds_GFH14808.1_9285 HaLaN_10928, GFH14808 RRM domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR032570 SF1-HH 74 193
IPR004088 KH_dom_type_1 202 285
IPR000504 RRM_dom 413 482
No external refs found!