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  5. Cre12.g553100

Cre12.g553100 (30792585)


Aliases : 30792585

Description : Varicose-related protein OS=Arabidopsis thaliana


Gene families : OG_01_0002530 (OrthoFinder) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g553100
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cz07g13090.t1 No alias Enhancer of mRNA-decapping protein 4, WD40 repeat region... 0.03 OrthoFinder
Vocar.0007s0329.1 32888094 Enhancer of mRNA-decapping protein 4, WD40 repeat region... 0.04 OrthoFinder
XM_003060552.1 MicpuC2_59964, 59964 Enhancer of mRNA-decapping protein 4, WD40 repeat region... 0.02 OrthoFinder
lcl|BLLF01002690.1_cds_GFH25004.1_19481 HaLaN_22893, GFH25004 Enhancer of mRNA-decapping protein 4, WD40 repeat region... 0.02 OrthoFinder
lcl|BLLF01002800.1_cds_GFH25382.1_19859 HaLaN_23332, GFH25382 WD40 repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61550.1_269 PRW61550 Enhancer of mRNA-decapping 4-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 120 204
No external refs found!