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  5. Cre12.g548000

Cre12.g548000 (30793370)


Aliases : 30793370

Description : Uncharacterized protein At3g06530 OS=Arabidopsis thaliana


Gene families : OG_01_0001400 (OrthoFinder) Phylogenetic Tree(s): OG0001400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g548000
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000074.2 tig00000074_g1194.t1 Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz07g10090.t1 No alias U3 small nucleolar RNA-associated protein 10, N-terminal... 0.06 OrthoFinder
Cz07g10100.t1 No alias BP28, C-terminal domain [Interproscan]. 0.08 OrthoFinder
EOD15958 No alias BP28, C-terminal domain [Interproscan]. 0.04 OrthoFinder
OT_08G00810.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.06 OrthoFinder
PTI_08G04460.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.04 OrthoFinder
Sro819_g207040.1 Contig8.g90 HEAT repeat-containing protein 1 0.03 OrthoFinder
Transcript_contig_53878 53878 BP28, C-terminal domain; U3 small nucleolar... 0.03 OrthoFinder
Vocar.0007s0207.1 32888237 U3 small nucleolar RNA-associated protein 10,... 0.04 OrthoFinder
XM_002501766.1 MICPUN_57945, 57945 BP28, C-terminal domain; U3 small nucleolar... 0.03 OrthoFinder
lcl|BLLF01000474.1_cds_GFH12167.1_6644 HaLaN_07804, GFH12167 BP28CT domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61623.1_230 PRW61623 U3 small nucleolar RNA-associated protein 10,... 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012954 BP28_C_dom 2175 2365
IPR022125 U3snoRNP10_N 254 372
No external refs found!