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  5. Cre12.g540076

Cre12.g540076 (30793437)


Aliases : 30793437

Description : Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component


Gene families : OG_01_0003497 (OrthoFinder) Phylogenetic Tree(s): OG0003497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g540076
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cz07g09190.t1 No alias Peptidase M24; Domain of unknown function DUF1747; FACT... 0.03 OrthoFinder
Dusal.0167s00006.1 33188855 FACT complex subunit Spt16, N-terminal lobe domain;... 0.02 OrthoFinder
OT_12G02030.1 No alias FACT complex subunit Spt16, N-terminal lobe domain;... 0.02 OrthoFinder
PTI_02G04200.1 No alias Peptidase M24; FACT complex subunit Spt16 domain; FACT... 0.02 OrthoFinder
Sro760_g198430.1 Contig3371.g26404 FACT complex subunit SPT16 0.03 OrthoFinder
Transcript_contig_61237 61237 FACT complex subunit Spt16, N-terminal lobe domain;... 0.01 OrthoFinder
Vocar.0007s0004.1 32887940 FACT complex subunit Spt16, N-terminal lobe domain;... 0.03 OrthoFinder
XM_003055344.1 MicpuC2_24033, 24033 Global transcription factor group C 0.03 OrthoFinder
lcl|BLLF01001730.1_cds_GFH20939.1_15416 HaLaN_18147, GFH20939 Peptidase M24; FACT complex subunit Spt16 domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01002204.1_cds_GFH23153.1_17630 HaLaN_20721, GFH23153 FACT complex subunit Spt16, N-terminal lobe domain... 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59881.1_6104 PRW59881 FACT complex subunit SPT16-like 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR000994 Pept_M24 185 426
IPR029148 FACT-Spt16_Nlobe 6 168
IPR013953 FACT_Spt16 562 709
IPR013719 DUF1747 836 921
No external refs found!