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  5. Cre12.g538750

Cre12.g538750 (30791720, LSM1)


Aliases : 30791720, LSM1

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm1 component


Gene families : OG_01_0000999 (OrthoFinder) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g538750
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.52 tig00020553_g10540.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cpa|evm.model.tig00020614.84 tig00020614_g12199.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder
Cz05g20220.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Cz11g16130.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
OT_08G00170.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
PTI_04G01510.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Vocar.0043s0043.1 32886948 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.08 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59319.1_7038 PRW59319 U6 snRNA-associated Sm LSm1 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498230.1_7183 KAA8498230 Sm-like protein LSM8 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 14 79
No external refs found!