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  5. Cre12.g537100

Cre12.g537100 (30793066)


Aliases : 30793066

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase


Gene families : OG_01_0000866 (OrthoFinder) Phylogenetic Tree(s): OG0000866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g537100
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001130.5 tig00001130_g7234.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder
Cz05g20150.t1 No alias Glutathione S-transferase, C-terminal; Aminoacyl-tRNA... 0.04 OrthoFinder
Cz06g08200.t1 No alias Aminoacyl-tRNA synthetase, class Ia; Valyl-tRNA... 0.02 OrthoFinder
Dusal.0452s00014.1 33191422 Aminoacyl-tRNA synthetase, class Ia [Interproscan]. 0.03 OrthoFinder
EOD05767 No alias Putative valyl-tRNA synthetase [Ensembl]. 0.04 OrthoFinder
EOD17893 No alias Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.03 OrthoFinder
OT_03G02900.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.07 OrthoFinder
OT_08G03790.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.04 OrthoFinder
PTI_13G01280.1 No alias Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.02 OrthoFinder
Sro408_g136830.1 Contig3193.g25218 Valine--tRNA ligase (Fragment) 0.07 OrthoFinder
Sro427_g140590.1 Contig2653.g21430 Valine--tRNA ligase 0.03 OrthoFinder
SymbC1.scaffold238.4 238.4 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.02 OrthoFinder
TP20G01590.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.02 OrthoFinder
Transcript_contig_89410 89410 Aminoacyl-tRNA synthetase, class Ia; Glutathione... 0.04 OrthoFinder
Vocar.0023s0186.1 32883240 Aminoacyl-tRNA synthetase, class Ia; Valyl-tRNA... 0.03 OrthoFinder
XM_002501649.1 MICPUN_96323, 96323 Valyl-tRNA synthetase, tRNA-binding arm; Aminoacyl-tRNA... 0.03 OrthoFinder
XM_003062580.1 MicpuC2_45875, 45875 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56769.1_9481 PRW56769 Valine-tRNA ligase isoform A 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494573.1_3103 KAA8494573 Valine--tRNA ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008987 quinolinate synthetase A activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 1013 1165
IPR004046 GST_C 104 178
IPR002300 aa-tRNA-synth_Ia 338 965
No external refs found!