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  5. Cre12.g536900

Cre12.g536900 (30793606)


Aliases : 30793606

No description available


Gene families : OG_01_0000164 (OrthoFinder) Phylogenetic Tree(s): OG0000164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g536900
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cz06g30080.t1 No alias Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.02 OrthoFinder
Cz06g30090.t1 No alias Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.01 OrthoFinder
Cz18g11070.t1 No alias Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.02 OrthoFinder
Dusal.0593s00008.1 33188033 Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.05 OrthoFinder
Sro91_g047870.1 Contig190.g2238 COBW domain-containing protein DDB_G0274527 0.04 OrthoFinder
Sro91_g047870.2 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.01 OrthoFinder
Transcript_contig_57651 57651 CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.04 OrthoFinder
Vocar.0034s0098.1 32893058 CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.03 OrthoFinder
Vocar.0062s0030.1 32892931 CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34073.1_3147 PRW34073 Cobalamin synthesis P47K 0.15 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 1085 1178
IPR003495 CobW/HypB/UreG_dom 453 604
IPR003495 CobW/HypB/UreG_dom 640 812
No external refs found!